Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs78292385 chr1:227295064 T/C 3.2E-5 178 15.53 15.65 3.9 KM Plot
PAAD rs78293595 chr7:20662524 A/G 1.6E-6 177 15.53 15.5 3.67 KM Plot
PAAD rs78297633 chr15:73029627 T/G 9.1E-13 177 15.62 14.75 1.37 KM Plot
PAAD rs78384568 chr1:227448375 A/G 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs78469866 chr1:227575024 G/A 6.96E-5 176 15.4 16.45 3.9 KM Plot
PAAD rs78587644 chr1:227251572 G/T 3.2E-5 178 15.53 15.65 3.9 KM Plot
PAAD rs78634790 chr1:227610481 C/G 5.04E-5 176 15.47 15.43 3.9 KM Plot
PAAD rs786416 chr2:44693146 T/G 9.53E-5 175 15.53 16 5.55 KM Plot
PAAD rs78650061 chr2:70495046 C/G 0 178 15.37 17.4 1.03 KM Plot
PAAD rs78707022 chr1:227574765 A/G 6.96E-5 176 15.4 16.45 3.9 KM Plot
PAAD rs78707784 chr1:227286400 T/C 3.2E-5 178 15.53 15.65 3.9 KM Plot
PAAD rs78735142 chr7:102793060 C/G 6.57E-8 173 16.17 11.98 3.43 KM Plot
PAAD rs78773974 chr2:128501702 G/A 7.9E-10 178 15.62 12.6 2.2 KM Plot
PAAD rs78816618 chr1:227512424 T/C 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs78824213 chr7:20656505 C/T 1.81E-6 178 15.53 15.57 3.67 KM Plot